Journal Publications

Journal

Automatic and Quantitative Measurement of Alveolar Bone Level in OCT Images Using Deep Learning

Sul-Hee Kim*, Jin Kim*, Su Yang, Sung-Hye Oh, Seung-Pyo Lee, Hoon Joo Yang, Tae-Il Kim, and Won-Jin Yi

Biomedical Optics Express

Developed deep learning methods for automatic measurement of alveolar bone levels in OCT images, providing a non-invasive alternative to traditional diagnostic methods.

Co-first Author* Deep Learning OCT Imaging Dental AI
arXiv

Autonomous Computer Vision Development with Agentic AI

Jin Kim, Muhammad Wahi-Anwa, Sangyun Park, Shawn Shin, John M. Hoffman, Matthew S. Brown

arXiv Preprint

Introduced agentic AI systems for autonomous computer vision development, demonstrating novel approaches to automated visual analysis.

First Author Agentic AI Computer Vision
Under Review Nature MI

Beyond the LUMIR challenge: The pathway to foundational registration models

Junyu Chen, Shuwen Wei, Joel Honkamaa, Pekka Marttinen, Hang Zhang, Min Liu, Yichao Zhou, Zuopeng Tan, Zhuoyuan Wang, Yi Wang, Hongchao Zhou, Shunbo Hu, Yi Zhang, Qian Tao, Lukas Förner, Thomas Wendler, Bailiang Jian, Benedikt Wiestler, Tim Hable, Jin Kim, Dan Ruan, Frederic Madesta, Thilo Sentker, Wiebke Heyer, Lianrui Zuo, Yuwei Dai, Jing Wu, Jerry L. Prince, Harrison Bai, Yong Du, Yihao Liu, Alessa Hering, Reuben Dorent, Lasse Hansen, Mattias P. Heinrich, and Aaron Caras

Nature Machine Intelligence (under review)

Comprehensive study on foundational models for medical image registration, establishing benchmarks and methodologies for the field.

Collaborative Work Medical Registration Foundation Models
Under Review Journal

Learn2Reg 2024: New Benchmark Datasets Driving Progress on New Challenges

Lasse Hansen, Wiebke Heyer, Christoph Großbrömer, Frederic Madesta, Thilo Sentker, Wang Jiazheng, Yuxi Zhang, Hang Zhang, Min Liu, Junyi Wang, Xi Zhu, Yuhua Li, Liwen Wang, Daniil Morozov, Nazim Haouchine, Joel Honkamaa, Pekka Marttinen, Yichao Zhou, Zuopeng Tan, Zhuoyuan Wang, Yi Wang, Hongchao Zhou, Shunbo Hu, Yi Zhang, Qian Tao, Lukas Förner, Thomas Wendler, Bailiang Jian, Christian Wachinger, Tim Hable, Jin Kim, Dan Ruan, Marek Wodzinski, Henning Müller, Tony C.W. Mok, Xi Jia, Mikael Brudfors, Seyed-Ahmad Ahmadi, Yunzheng Zhu, William Hsu, Tina Kapur, William M. Wells, Alexandra Golby, Aaron Carass, Harrison Bai, Yihao Liu, Perrine Paul-Gilloteaux, Joakim Lindblad, Nataša Sladoje, Andreas Walter, Junyu Chen, Reuben Dorent, Alessa Hering, Mattias P. Heinrich

Learn2Reg 2024, Machine Learning for Biomedical Imaging (under review)

Comprehensive benchmarking study introducing new datasets and challenges for medical image registration, advancing the state-of-the-art in the field.

Collaborative Work Medical Registration Benchmarking
MICCAI Workshop Accepted

Dual-path Radiology Report Generation: Fusing Pathology Classification with Language Model

Jin Kim, Matthew Brown, Dan Ruan

MICCAI 2025 Workshop on MLLMs in Clinical Practice

Novel approach to automated radiology report generation combining pathology classification with advanced language modeling techniques.

First Author Vision-Language Medical Reports

Conference Papers

Under Review ICCV Workshop

TRACE: Textual Reasoning for Affordance Coordinate Extraction

Sangyun Park*, Jin Kim*, Yuchen Cui, Matthew Sherman Brown

ICCV 2025 Workshop on Knowledge-Intensive Multimodal Reasoning (Under Review)

Innovative approach to affordance coordinate extraction using textual reasoning in multimodal environments.

Co-first Author* Multimodal Reasoning Spatial Understanding
Under Review ICCV Workshop

SPAR: Spatial Precision with Articulated Reasoning

Sangyun Park*, Jin Kim*

ICCV 2025 Workshop on Multi-Modal Reasoning for Agentic Intelligence (Under Review)

Advanced spatial reasoning framework for articulated object understanding and manipulation.

Co-first Author* Spatial Reasoning Agentic AI
RSNA Oral Presentation

Improving Foundation Models with Deep Layer Adapters for Medical Image Segmentation

Jin Kim, Matthew Brown, Dan Ruan

RSNA 2024

Demonstrated the effectiveness of deep layer adapters in improving foundation model performance for medical image segmentation tasks.

First Author Foundation Models Medical Segmentation
SPIE Poster

Self-Supervised Learning Without Annotations to Improve Lung Chest X-Ray Segmentation

Jin Kim, Matthew Brown, Dan Ruan

SPIE 2024

Novel self-supervised learning approach for chest X-ray segmentation that eliminates the need for manual annotations.

First Author Self-Supervised Learning Medical Imaging
EMBC

A Faster Deep learning-based Registration for Ear Surgery

Jin Kim, Da-El Kim, Min-Hyuk Choi, Su Yang, Se-Ryong Kang, So-Young Chun, and Won-Jin Yi

EMBC 2022

Developed faster deep learning-based registration methods for enhanced precision in ear surgery navigation systems.

First Author Medical Registration Surgical Navigation
EMBC

A Deep Learning-based Method for Tooth Segmentation on Panoramic Dental X-ray Images

Jin Kim, Su Yang, Min-Hyuk Choi, Sang-Jeong Lee, Bo-Soung Jeoun, Geonsoo Kim and Won-Jin Yi

EMBC 2021

Automated tooth segmentation method for panoramic dental X-rays using advanced deep learning architectures.

First Author Medical Imaging Dental AI
CICS

SANet: Self-Attention U-Net for Binary Tooth Segmentation

Jin Kim, Su Yang, Min-Hyuk Choi, Bo-Soung Jeoun and Won-Jin Yi

CICS 2021

Novel U-Net architecture with self-attention mechanisms for improved binary tooth segmentation performance.

First Author Deep Learning Attention Mechanism
EMBC

CAPPU-Net: A Convolutional Attention Network with Pyramid Pooling for Segmentation of Middle and Inner Ear Structures in CT Images

Geonsoo Kim, Bo-Soung Jeoun, Su Yang, Jin Kim, Sang-Jeong Lee, Won-Jin Yi

EMBC 2021

Convolutional attention network with pyramid pooling for automated segmentation of ear structures in CT images.

Co-author Medical Imaging Attention Networks
MIDL

SinusNet: Label-Free Segmentation of Maxillary Sinus Lesion in CBCT Images

Da-El Kim, Su Yang, Se-Ryong Kang, Jin Kim, So-Young Chun, Min-Hyuk Choi, Won-Jin Yi

Medical Imaging with Deep Learning 2022

Label-free segmentation approach for maxillary sinus lesions in CBCT images using deep learning.

Co-author Medical Imaging Label-free Learning
EMBC

A deep learning-based method for tooth segmentation on CBCT images affected by metal artifacts

Su Yang, Sang-Jeong Lee, Tae-Hoon Yong, Jun-Young Yoo, So-Young Chun, Jin Kim, Yoon-Ji Seol, Geonsoo Kim, Won-Jin Yi

EMBC 2021

Deep learning method for tooth segmentation in CBCT images with metal artifact challenges.

Co-author Medical Imaging Artifact Handling
Korean Conference

A Registration Method between Optical Tracker and Depth Camera Using Deep Learning

Jin Kim, Da-El Kim, Min-Hyuk Choi, Su Yang, Se-Ryong Kang, So-Young Chun, Jun-Young Yoo, Seung Noh, Won-Jin Yi

The Institute of Electronics and Information Engineers 2022

Deep learning-based registration method between optical tracker and depth camera for surgical navigation applications.

First Author Registration Surgical Navigation

Patents

Patent Korea

NAVIGATION APPARATUS AND METHOD BASED ON AUGMENTED REALITY MICROSCOPE

Seon Tae Kim, Dong Kyu Kim, Wonjin Yi, Jin Kim, Bo Soung Jeoun

Patent No: 10-2021-0188979

Augmented reality-based navigation system for enhanced surgical precision using microscope integration. Part of Master's thesis: Development of an AI-Enhanced AR Navigation System for Precise Mastoidectomy.

AR Navigation Surgical Technology Medical Device
Patent Korea

NAVIGATION SYSTEM USING SPRINT AND IMAGE REGISTRATION METHOD USING THE SAME

Seon Tae Kim, Dong Kyu Kim, Wonjin Yi, Jin Kim, Bo Soung Jeoun

Patent No: 10-2021-0188978

Advanced navigation system utilizing sprint technology and sophisticated image registration methods for surgical applications. Part of Master's thesis: Development of an AI-Enhanced AR Navigation System for Precise Mastoidectomy.

Image Registration Surgical Navigation Medical Technology

Thesis & Academic Documents

PhD Proposal 2024

Vision-Language Modeling for Medical Image Analysis

Jin Kim

Ph.D. Dissertation Proposal, UCLA Physics and Biology in Medicine

Comprehensive research proposal outlining vision-language foundation models for medical imaging applications, including parameter-efficient fine-tuning and knowledge distillation strategies.

Dissertation Committee:
  • • Dr. Matthew S. Brown (Chair)
  • • Dr. Dan Ruan (Co-Chair)
  • • Dr. John M. Hoffman
  • • Dr. Michael McNitt-Gray
  • • Dr. Yong Jae Lee
Vision-Language Models Medical Imaging Foundation Models
PhD Qualifier 2023

Leveraging Foundation Models, Knowledge Distillation, and Pseudo-Labeling for Robust Lung Segmentation in Computed Tomography Scans

Jin Kim

Ph.D. Qualifying Examination, UCLA Physics and Biology in Medicine

Qualifying examination demonstrating expertise in foundation models, knowledge distillation, and pseudo-labeling techniques for medical image segmentation, specifically focusing on lung segmentation in CT scans.

Foundation Models Knowledge Distillation Medical Segmentation
Master's Thesis 2022

Development of an AI-Enhanced AR Navigation System for Precise Mastoidectomy

Jin Kim

M.E. Thesis, Seoul National University Interdisciplinary Program of Bioengineering

Comprehensive system integrating computer vision, deep learning, and augmented reality for surgical precision enhancement in ENT procedures. This foundational work established core competencies that inform current Vision-Language model research.

Augmented Reality Surgical Navigation Medical AI

Selected Honors & Awards

🏆

1st place - SPIE 2024 Live Demonstrations Workshop

Mar 2024

Winner for "SimpleMind: A Cognitive AI software environment for aggregating deep learning algorithms and reasoning with their outputs" as voted by attendees.

🥉

3rd place - MOAI 2021 CT Segmentation task

Sep 2021

Achieved third place in the Body Morphometry A.I. Segmentation online challenge (Pseudolab).

🥉

3rd place - Oral Disease AI Contest

Mar 2021

Third place in classification task for oral disease detection using AI methods.

🥇

1st place - Healthhub datathon

Nov 2020

First place in CBCT Segmentation task with Team MIIL, demonstrating excellence in medical image analysis (Healthhub datathon).

Academic Service

📝

Reviewer, MICCAI 2025

Reviewing papers in medical image computing and computer-assisted interventions.